PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g067050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 23179.5 Da PI: 3.9595 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 9.6e-12 | 14 | 107 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv + + l lp +f + ++ +k +++++ g+ W++ + rk+ g +v+ +GWk+ vk +Lk g+f+ F +dg+ +f++ Csa02g067050.1 14 FFKVY--LPDESGDDLELPISFNSFL--PNLLPKSVMVRSIYGNIWKMAF--RKCCGDierFVMVNGWKKIVKGVDLKGGEFLEFDFDGSWCFNF 102 66766..4445556699999997444..4557889***************..666666666***************************9999987 PP EEEEE CS B3 93 vvkvf 97 +v + Csa02g067050.1 103 CVYGR 107 77665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-17 | 8 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-12 | 10 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.433 | 12 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.06E-10 | 12 | 105 | No hit | No description |
Pfam | PF02362 | 1.1E-9 | 14 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-7 | 14 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNKGNYVDGR LPKFFKVYLP DESGDDLELP ISFNSFLPNL LPKSVMVRSI YGNIWKMAFR 60 KCCGDIERFV MVNGWKKIVK GVDLKGGEFL EFDFDGSWCF NFCVYGRETC KMLRSSVQIK 120 EIEDVSSDGE DDKHSDDITV LDDENDDDQY YGDEDKSSEN IIVLDDDTSD VQDYGEEDTS 180 TEDIIVIDDD DGDDENEKKK RS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g067050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026632 | 1e-101 | AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12. | |||
GenBank | CP002688 | 1e-101 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019095666.1 | 1e-115 | PREDICTED: B3 domain-containing protein At5g60142-like, partial | ||||
Swissprot | Q9LST3 | 2e-74 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | R0GS24 | 2e-95 | R0GS24_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010485253.1 | 1e-115 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 4e-69 | B3 family protein |