PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g064250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 618aa    MW: 67474.7 Da    PI: 5.1448
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g064250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08258278526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd+C +aHg
  Csa02g064250.1 258 PCPEFRK-GSCSRGDTCEYAHG 278
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.22E-1411165IPR020683Ankyrin repeat-containing domain
PfamPF127961.8E-953123IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-1457132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.10657132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00185787IPR002110Ankyrin repeat
CDDcd002043.04E-1459132No hitNo description
PROSITE profilePS500889.59192127IPR002110Ankyrin repeat
SMARTSM002480.004992124IPR002110Ankyrin repeat
SMARTSM003564.9E-5253279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4257280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263258280IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6258278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4286316IPR000571Zinc finger, CCCH-type
SMARTSM0035620288311IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221288312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MGDDELSHLK FSLLLESSAC NDLSGFKSLV EEEGLEIIDR SGLWYGRRLG SKKMGFEERT  60
PLMIAALFGS KDIVDYIISN GLVDVNRSCG SDGATALHCA VSGLSANSLD VVTLLLKGSA  120
DPDSCDAYGN KPGDVIFPCL SPVFGARKKV LERLLKGNDD LNEVNVQEEG EREVEVEVEV  180
SVSVSPPRGS ERKEYPVDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP  240
GENARRRDPR KYHYSCVPCP EFRKGSCSRG DTCEYAHGIF ECWLHPAQYR TRLCKDETNC  300
SRRVCFFAHK PEELRPLYPS TGSGVPSPRS SFSSCNSSCA YDMAPISPLP LGASATPPLS  360
PNGVSSPIGG GKTWLNWPTI TPPALQLPGS RLKSALNARE IDFSEEMQSL SSPSRWNNNT  420
PMSAASSPFS GKGMNMLAGG AMSPVNSLTD MFGTEDNNTS GLQIRRNIIN QQLHPNSLSS  480
SPVGANSLFS MDSSTVLASR AAEFAKQRSL SFTERNNGGL NHHPAISSMT STCLNDWASL  540
DGKLDWSVQG DELQKLRNST SFRLRAGGME PSVSNEGTGL EEPDVSWVEP LVKEPQETRL  600
APVWMEQSYM ETEQTVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g064250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453982.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLR0GPL20.0R0GPL2_9BRAS; Uncharacterized protein
STRINGXP_010453982.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein