PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g059090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 503aa    MW: 55483 Da    PI: 4.941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g059090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001383105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk+Fs+   L  H r H
  Csa02g059090.1  83 HVCSECGKRFSSGKALGGHKRIH 105
                     79****************99998 PP
2zf-C2H211.10.0012133153323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  C k F++   L  H+r H
  Csa02g059090.1 133 CCVCYKKFTSMKALYGHMRYH 153
                     *******************99 PP
3zf-C2H211.30.0011346368123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksFs+   L  H  +H
  Csa02g059090.1 346 HVCVTCNKSFSSYQALGGHRASH 368
                     79***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-680105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.57E-981153No hitNo description
PfamPF139122.2E-982105IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.36583110IPR007087Zinc finger, C2H2
SMARTSM003550.01683105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM003551.9131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704131153IPR007087Zinc finger, C2H2
PfamPF139120.002133154IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576673.14E-7345368No hitNo description
PfamPF139123.0E-10346370IPR007087Zinc finger, C2H2
SMARTSM003550.38346368IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39346373IPR007087Zinc finger, C2H2
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
SuperFamilySSF576673.14E-7410437No hitNo description
PfamPF139128.8E-13415438IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787415437IPR007087Zinc finger, C2H2
SMARTSM003550.4415437IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280417437IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDLLRGSKTN CKFSLGRPRF GSIKVKIPRI QHEEGKGVEE DDEAKNIGLE EEEDDHEAKS  60
MDLEEGDVEE EEEEEDEEKK KHHVCSECGK RFSSGKALGG HKRIHAQYSM VQRPKMVSGM  120
VGRSERGELE VACCVCYKKF TSMKALYGHM RYHPDRGWKG VLPPPPPPPL PHPLGNSSSS  180
TLSIDDHDDE FISSDYDDDD NDFDDDDDDE NSELWDNNLE SENVVDLKES FKGWSTKGKR  240
GRRSDLKVDE SDLKDQPQED MNDANNLLFL ATTAEEAANL NVAETYNSHS VEEKDLEMVK  300
KRKKKKKSLS EMEKESSSTH HDHHQLAVVA AAAEEGGAAA GVREKHVCVT CNKSFSSYQA  360
LGGHRASHNK VRVLENHLAR ANAEASLLGI EAIVTGLASA QGSNTSISSS NNGDHICNIC  420
HRSFPTGQAL GGHKRCHWTG PVSTEAATAA PTAAPTTAPA EASSSQAQAT EIVQEVKKLK  480
RSFLEFDLNE LPPHEDEEEE RV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299303KKRKK
2300306KRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g059090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450774.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLR0EWN00.0R0EWN0_9BRAS; Uncharacterized protein
STRINGXP_010450774.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-152C2H2 family protein