PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g011490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21987.9 Da PI: 8.3619 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.8e-13 | 91 | 134 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+ ++++ +++G+g+Wk I+r+ k+R + q+ s+ qky Csa01g011490.1 91 WTEEEHRSFLEGLEKYGKGDWKNISRECVKTRNPMQVASHAQKY 134 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 33 | 3 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.733 | 83 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-9 | 87 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 87 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-16 | 88 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-15 | 89 | 138 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-10 | 91 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.71E-10 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASIPQWTWD EHKRFEIAVA QSLVDSSSSL ENIAKLLKKP FEEVKYYYEA LVYDVGMIES 60 DNIALPKYRD DDYVSLKEAR KPIHIIKGRF WTEEEHRSFL EGLEKYGKGD WKNISRECVK 120 TRNPMQVASH AQKYYLRQSS DGKKGKRSSI HDITLGDIPG PNLKPMGGQP EFGGQIPPYQ 180 NYYSQNNVGP L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g011490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010418602.1 | 2e-98 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | R0I633 | 6e-71 | R0I633_9BRAS; Uncharacterized protein | ||||
STRING | XP_010418602.1 | 8e-98 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14731 | 7 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 2e-68 | MYB_related family protein |