PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g005410.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 335aa MW: 36889 Da PI: 9.5911

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g005410.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.2e-31	267	324	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ Csa01g005410.1 267 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 324 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.1E-15	226	263	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.2E-33	253	324	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	260	326	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	263	324	IPR003657	WRKY domain
SMART	SM00774	4.6E-37	265	325	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	267	323	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MEEVEAANKS AIESCHGVLN LLSQQAGSDP KSLVAETGEA VSKFKRVASL LSRGLGHGKF 60 RSINKFRSSF PQHIFLESPI CCAANDVTGD YTQVLAPEPL QMVPASAVYD GIDPKHHMGH 120 PLPLIHNMCV DKSFLELKQP PPFRAPYQLI HNHQQIAYSR SNCGVNLKFD GSGSSCYTPS 180 VSNGSRSFVS SLSMDASVAD YDRKSFHLTG LSRGSDHISQ HSRKMCSGSM KCGSRSKCHC 240 SKKRKMRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR 300 KHVERCIDET SMLIVTYEGE HNHSRILSSQ SAHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	258	323	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g005410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF404860	0.0	AF404860.1 Arabidopsis thaliana WRKY transcription factor 39 (WRKY39) mRNA, complete cds.
GenBank	AY053420	0.0	AY053420.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
GenBank	AY133586	0.0	AY133586.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417626.1	0.0	PREDICTED: probable WRKY transcription factor 39
Swissprot	Q9SR07	0.0	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	D7L2W9	0.0	D7L2W9_ARALL; WRKY DNA-binding protein 39
STRING	XP_010417626.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	0.0	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]