PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre06.g285600.t1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | Nin-like | ||||||||
Protein Properties | Length: 1332aa MW: 136021 Da PI: 6.8936 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 57.1 | 3.5e-18 | 1131 | 1176 | 6 | 51 |
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +le+l++y++ pik+AA+ Lg++lT K CR++G++RWP Rk++ Cre06.g285600.t1.2 1131 TLEQLKRYYEQPIKAAARALGISLTCFKGVCRRLGVPRWPGRKLQT 1176 79*****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.278 | 1111 | 1199 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.6E-16 | 1131 | 1176 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 1332 aa Download sequence Send to blast |
MLDTFDSLVA GLPMLLDTDD GPSLEDLLTG ASSAPQLRTR QEAAEKMILG TSDLFLDSVP 60 DLWMADGAGD SAGGCGNGGL LDGGGLQRSQ QQQTHRTLLP AAAEESRVCS GAATPPAAAI 120 AAPSEALGSH VPGGESNAAA FSRGQGLRLQ QQQAAGPAAG IAGGAAATAC GLGAALDAAS 180 SRMRIVSSSS QALFHSTASP AVCLDRSASS TASAGAAAPA APAPPVTPAA AAIARLMSYT 240 QPPPPAPAHA AGPVRIAAGS SRAALLLSPR AVAEMPARYD GCLSVPPATF SSTTSWNPWR 300 PIPTPAEVLA AATAAAADGG GGLAPTRFGD CLFGRAAGAH CISDPVAMPS LRIASSAEVS 360 ALKANGAGFQ HAYPGGGGFG GGSALATASS WHASCSAMFL EQQQQQQLQQ SSLPQLPAAG 420 FGDGELSHRR LLPLTAANPL GGNSKRRHDG GGGFLLPGPG QRRGAAVDGM DDFLDDWGAG 480 PAGCWGAPLI MPPPALCAPP LLPNDHGGND GGKGAAGGSG SQISSLRSAW STGVLLRQQG 540 SAPAHVVSSS SLQQPHGSPA PPVAAAALHV HQQHDWQQRL IAVSPAAVAA AEAAGGDAAS 600 SSGHGSGLGN SAEAGPMRLG PMQQQQQQQQ VEQQLQQLQQ LQCESLLHRR WLPDGGGGGA 660 APASGSGATC GPGSREPARW PPVAVESICC PPCQQLPAGF TPPLTPPLDT MDRVLTSLEQ 720 IKLQQFQQQE RRQQQQQQQQ QQQLAAGWSG GPQAQQQWLP QQPQPLGHQA HTAAAPPLRI 780 QLEMELEALA VQGPLLSTPR GDNTTTHSAL VVAPLPHDFA ATCLLGQQGM GSAADDAGGA 840 CWVRGSSSRV PLDSSSGKAT YEPSAGAAAA LSAAVAALPP AAAGGAAPRG IERQLDRPAP 900 LGPQQQQAAQ QQGADACCGR RGHLMELRGI GASGTYACGL EDHVMPLELQ QQQRHLQQQL 960 PRPINSTDVE KLVPPADGCE GAAAVRRAEE RLQLLSSGGG LRVLHGSTSS GRVPSEYLKP 1020 AAAAEKQGDG DSRALPTKAR DAAASAVDAG LPRKKRPGAG DKAAQLLARA KAQAAAVDWP 1080 LPLPAEAKRS GRSTGAPRVK EEDEDGEWMG DEGPLVAVAL LGEHPLQQEP TLEQLKRYYE 1140 QPIKAAARAL GISLTCFKGV CRRLGVPRWP GRKLQTLKKM RDTLLQAGVG GAVTIECAGG 1200 AVISPAEQTD LIAKIALNIS DIYADACTPM YPEFTRVRQL QYKTRSVARQ GRRGGASGGG 1260 GAGRKGAEGS DSSDGEGTVT RRTTGGAGVG KRGGGVVKRR RRFSERYSVS SDEEASEASE 1320 EPDAGEVPQE D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre06.g285600.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001695357.1 | 0.0 | RWP-RK transcription factor | ||||
TrEMBL | A0A2K3DPY0 | 0.0 | A0A2K3DPY0_CHLRE; Uncharacterized protein | ||||
STRING | EDP01615 | 0.0 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6094 | 2 | 8 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-09 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cre06.g285600.t1.2 |