PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre05.g238250.t1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | bZIP | ||||||||
Protein Properties | Length: 525aa MW: 53624.2 Da PI: 5.3337 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44 | 4.7e-14 | 238 | 297 | 3 | 62 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++r+rr++kNR+ A rsR+RKka eLee+ k +e+eN +L+ le+ e +lk++ Cre05.g238250.t1.2 238 ERRRQRRLAKNRVTAARSRERKKAAWSELEERLKGIETENAQLRAMLETFARENTALKAQ 297 789**************************************************9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-12 | 235 | 300 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.1E-12 | 238 | 297 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.921 | 238 | 301 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.9E-14 | 240 | 299 | No hit | No description |
SuperFamily | SSF57959 | 3.38E-10 | 240 | 298 | No hit | No description |
CDD | cd14704 | 2.44E-18 | 241 | 291 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MDVDGLDLAA LLAEGPDSGV GPSLLDDELF SEDLMQFLET IEGQPTSTQC HQKLAAQQQQ 60 QPVPAPAPAP APAVPIPVAT SSPAVAMSPT ASTSSGCSSG VVAAPAPIPT PVAPAAAAVA 120 LAALQQAQMQ QLQPACAAML PRLVTTTAAQ QMWTAMLQAA CTVTPALAAA HAPAAASVDD 180 AKARAQPAGT SRQGSREDSG DSSDTDQDDD MVDSKGKSVG NKRKAPEVDW RQIEDPAERR 240 RQRRLAKNRV TAARSRERKK AAWSELEERL KGIETENAQL RAMLETFARE NTALKAQLLT 300 VAAAGGVPGL NHGQAGKTMD PASVLPVFIA IMLVVSALLP GDKACALLGS LLPLALIASM 360 MGAAGSGANA NGGAAFDCLF RLMHSLSTLL SKSSRTLQRS LKRMLLARQR YLGAKGMAKL 420 GTAGARLFDQ LLTTPSPTSP SAAEDPGIAP GSPSDSDGRN NADMDVDVAT VLAAEPAEQA 480 PPTATCAAAV LGAKPTAEAP VVAMAGALQA GCGGVVVVKQ EPVC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 243 | RQIEDPAERRRQRR |
2 | 237 | 244 | ERRRQRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00117 | ampDAP | Transfer from AT5G11260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre05.g238250.t1.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002957643.1 | 1e-108 | hypothetical protein VOLCADRAFT_121646 | ||||
TrEMBL | A0A2K3DSZ4 | 0.0 | A0A2K3DSZ4_CHLRE; Uncharacterized protein | ||||
STRING | XP_002957643.1 | 1e-107 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5773 | 7 | 8 | Representative plant | OGRP2081 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 9e-10 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre05.g238250.t1.2 |