PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_33264_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 73aa MW: 8421.41 Da PI: 6.5261

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_33264_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35	2.4e-11	24	72	4	52
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++++t q+e L + Fe ++++ +++ +L k+lg + +qV +WFqNr Cotton_A_33264_BGI-A2_v1.0 24 KRRLTVIQVEFLDRSFEVENKLASDKKLRLQKELGQQPQQVAIWFQNRH 72 5689999****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.72E-11	9	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-12	10	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.163	18	73	IPR001356	Homeobox domain
SMART	SM00389	0.0056	21	73	IPR001356	Homeobox domain
Pfam	PF00046	7.2E-9	23	72	IPR001356	Homeobox domain
CDD	cd00086	3.59E-7	23	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MEYEHVNGGD EDLDGSSQPP GGKKRRLTVI QVEFLDRSFE VENKLASDKK LRLQKELGQQ 60 PQQVAIWFQN RHA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016666165.1	3e-34	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
Refseq	XP_016666167.1	2e-34	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
Refseq	XP_016666168.1	2e-34	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
Refseq	XP_017632416.1	3e-34	PREDICTED: homeobox-leucine zipper protein ATHB-54 isoform X1
Refseq	XP_017632417.1	2e-34	PREDICTED: homeobox-leucine zipper protein HAT5 isoform X2
Swissprot	Q6K498	4e-16	HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
Swissprot	Q9XH37	4e-16	HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBL	A0A2P5YTR9	1e-45	A0A2P5YTR9_GOSBA; Uncharacterized protein
STRING	Gorai.005G189800.1	3e-32	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	1e-17	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]