PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32901_BGI-A2_v1.0
Common NameF383_07643
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 673aa    MW: 70859.6 Da    PI: 7.3763
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32901_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08204249145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                                 r++W++ Ed+ l+ av++ G g+W+ I r      Rt+ q+  rw 
  Cotton_A_32901_BGI-A2_v1.0 204 RKPWSEAEDLELIAAVQKCGVGNWANILRGDFkGDRTASQLAQRWT 249
                                 789************************98422359*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.342199256IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-12200252IPR009057Homeodomain-like
SuperFamilySSF466892.66E-12201257IPR009057Homeodomain-like
SMARTSM007175.4E-11203254IPR001005SANT/Myb domain
PfamPF002493.9E-7204249IPR001005SANT/Myb domain
CDDcd116608.89E-14205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MIQNTKKQRK GSISEEDIST LLQRYTATTV LALLQEVAQF PGVKLDWNAL IKKTSTGISN  60
AREYQMLWRH LAYRDVLLEK LEDGAAPLDD DSDLEYELEP CPSVSSETSA EAAACVKVLI  120
ASGLPNDSSL ANSSMVDAPL TINIPNARSF RVSSENLQPT CSMPGTNITV PVSVQKKILP  180
SVTLAETMEG NGPAGANLPA RRKRKPWSEA EDLELIAAVQ KCGVGNWANI LRGDFKGDRT  240
ASQLAQRWTV IKKRCGNLNV EGNSAIPQLS EAQLATRSAL SLALDMPDKN LTAACTNNPG  300
LKIMSSSAPP TAGGEASVQA QSQVQQGPLA SVEAQIQSQQ GPIASVSSRN RSQEGPITSA  360
SPQNPSQQGP VASVQVPNQS QQGSMPTKTS PRGSSGSTLK SRVTLKKAPA KPFSTTGSIL  420
DATAVAAGAR IGSPEAAASL LKAAQSKNAI HIMTTGGSSV KPVIPSGTSS QYVCTGLTAE  480
AHSSPVTSST LHPGSVKPAT QRVELTSSVS LSINAPMQQC NAVTSGTAVE VSPKEDLEIK  540
GSVSDSLPKE QVRENRAYVS KNERGKEVKD HKEALTNPGS ELRNIVAEAE HPNEKLMVDG  600
DQVGVKANPV EESVNASDSK DCLLVKKSTT QPTAEESCRN HSMTEMPAKA SSLSDGCAKN  660
LEVLSTAETG RAT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642568.10.0PREDICTED: uncharacterized protein LOC108483596
TrEMBLA0A0B0P7U10.0A0A0B0P7U1_GOSAR; Telomeric repeat-binding factor 1
STRINGGorai.002G139000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-72MYB_related family protein