PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28455_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 307aa MW: 34020.7 Da PI: 7.136 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.9e-20 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k Cotton_A_28455_BGI-A2_v1.0 10 KLENPNGRQATYAKRKHGIMKKANELSILCDVEIVLLMFSPTNK 53 5789999**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.521 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.84E-25 | 2 | 81 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-25 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRVKLKIKK LENPNGRQAT YAKRKHGIMK KANELSILCD VEIVLLMFSP TNKPSLCIGK 60 RSIEEIIEKF AQLTPQERAK RKLESLEENL GKQQQLLSLE CTSQFQNEMQ VPYRMGLEHQ 120 LQTLSWLPNQ DSRHIALSDD PNLIPHRDVE CSASSSFGSY SGYFGTGKSS EPSSSGQENS 180 ILNDLSGNGS LQLQLGGQCP LFSYNLNILN DPKFPPVAEM NFNETPADYQ VNGALQGPRT 240 GFDTAPGSWA STSGSCAVTM FDEPLYTRVS LSPLLPLCFQ HLAMLHGLPY YFMHAAPTAL 300 SNPKVYS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM236448 | 1e-94 | HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641039.1 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X2 | ||||
Swissprot | Q1PFA4 | 7e-39 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A0B0MFT9 | 0.0 | A0A0B0MFT9_GOSAR; Floral homeotic APETALA 3-like protein | ||||
STRING | POPTR_0010s17450.1 | 1e-116 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69540.1 | 2e-42 | AGAMOUS-like 94 |
Publications ? help Back to Top | |||
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