PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_27817_BGI-A2_v1.0 | ||||||||
Common Name | F383_09177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 263aa MW: 29578.4 Da PI: 7.9848 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1.1e-19 | 118 | 172 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Cotton_A_27817_BGI-A2_v1.0 118 RKKLKLTKEQSSVLEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTK 172 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.2 | 4.4e-38 | 118 | 206 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk++l+keq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d e Lk+++++lkeen+rL+ke Cotton_A_27817_BGI-A2_v1.0 118 RKKLKLTKEQSSVLEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDRELLKKCCETLKEENKRLHKE 200 69********************************************************************************* PP HD-ZIP_I/II 84 veeLree 90 +eL+ + Cotton_A_27817_BGI-A2_v1.0 201 LQELK-S 206 ****9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.475 | 114 | 174 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-17 | 116 | 178 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.72E-18 | 116 | 181 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.00E-16 | 117 | 175 | No hit | No description |
Pfam | PF00046 | 4.8E-17 | 118 | 172 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 118 | 172 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 149 | 172 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.1E-6 | 174 | 207 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-18 | 174 | 217 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGLDDICNTG LCLGLGIGCL VKQENISQSD HHQQKKKKPF LKHDQLFPSL SLGPSHDVHG 60 QGESIDLHQR QASSLSLSAV SSFSNSSVKR ERDFGGEEVE LERVCSRVSD EDEEGSPRKK 120 LKLTKEQSSV LEDSFKEHST LNPKQKQALA EQLNLRPRQV EVWFQNRRAR TKLKQTEVDR 180 ELLKKCCETL KEENKRLHKE LQELKSLKLT ASYYMHLPAA TLTLCPSCER VDNGGEAPST 240 SSPFTMGQKS HFFSSFTHPS AAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 174 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016748990.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_017605418.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_017605431.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 3e-83 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0B0PA77 | 0.0 | A0A0B0PA77_GOSAR; Homeobox-leucine zipper HAT22-like protein | ||||
TrEMBL | A0A1U8PCX7 | 0.0 | A0A1U8PCX7_GOSHI; homeobox-leucine zipper protein HAT22-like | ||||
STRING | Gorai.009G223100.1 | 1e-143 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22335 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-76 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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