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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_23218_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 293aa MW: 33418.1 Da PI: 6.18 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_23218_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59 | 1e-18 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd l+ v+ +G g+W+++ar g++Rt+k+c++rw++y+
Cotton_A_23218_BGI-A2_v1.0 23 KGPWTEEEDSMLKAHVNIHGEGRWNAVARLSGLRRTGKSCRLRWLNYM 70
79********************************************97 PP
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2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
Cotton_A_23218_BGI-A2_v1.0 76 RGNISLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
78899*****************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MDVYKRGFIS ETSRNEEEME LRKGPWTEEE DSMLKAHVNI HGEGRWNAVA RLSGLRRTGK 60 SCRLRWLNYM RPEIKRGNIS LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKQAKQLNC DVNSKQFKDA MRYVWIPRLV ERIRASSESP SSQPSTTTKT TYNDCISNIS 180 SSQMSYANAS GSVQVDPSLL PELSGTSSDS LDTQVSSVSD LTDCYNPQSL SNYLHKGLGL 240 EKEGAATWGR DEEFQATEEH SNGLLVGGGE SSMDTVWNEE NVWFLQQQLH DGI
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT281917 | 0.0 | KT281917.1 Gossypium hirsutum MYB protein 108 mRNA, complete cds. |