![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_22342_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 236aa MW: 28232.9 Da PI: 8.8164 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.7 | 1e-20 | 2 | 72 | 13 | 86 |
trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +r e+++++ ++k++k lWe +s +mre+gf+rs +qCk+kw+nl +ryk ++++e++ ++++p++++l+ Cotton_A_22342_BGI-A2_v1.0 2 IRAELDRSFMETKRNKLLWEVISTRMREKGFNRSTEQCKCKWKNLVTRYKGCETMEEEA---MRQQFPFYNELQ 72 7999*****************************************************95...56689*****98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 8.66E-17 | 1 | 54 | No hit | No description |
Pfam | PF13837 | 5.0E-16 | 5 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MIRAELDRSF METKRNKLLW EVISTRMREK GFNRSTEQCK CKWKNLVTRY KGCETMEEEA 60 MRQQFPFYNE LQAIFSARMQ SILWSESEGG ATGSKRKAVQ LSSDEEEDTE EKELEKSSVR 120 KKKQGKTSGG AGIGGSTSGN GNNSNNIKEI LEDFMRQQMQ MEMQWREAFE ARENERRLKE 180 MEWRQKMEAL ENERILMDRR WYEREEQRRM REEARAEKRD TLITALLNKL RRDDHM |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
![]() |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN127768 | 2e-52 | JN127768.1 Theobroma cacao clone TCC_BC011L18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605653.1 | 1e-171 | PREDICTED: trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 2e-65 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A1U8HYF7 | 1e-168 | A0A1U8HYF7_GOSHI; trihelix transcription factor GT-3b-like | ||||
STRING | Gorai.006G183000.1 | 1e-168 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01380.1 | 8e-46 | Trihelix family protein |