PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21720_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 271aa    MW: 29840.2 Da    PI: 4.6491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21720_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-101952351055
                                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Cotton_A_21720_BGI-A2_v1.0 195 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 235
                                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14186251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12190244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-12194239No hitNo description
PfamPF000107.5E-8195235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDSMGTLLGD WSCFSGMYTT DQEADFMAQL LSNCPQLPDI DMSNYLSDSY PVFVTNNSPI  60
SMDFCMEDGT NTGFFLVEPD DCLNPEMGKD GNVEKEPKPE PEKKSSNKRS RNSGDVHVQK  120
TKRNGRSKKN QTIAANDDED GNGGLNGQSW ASCSSEDDSN GGASSGSKGE TTLNLNGKTR  180
ASRGAATDPQ SLYARKRRER INERLRILQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL  240
LSSDDLWMYA PIAYNGMDIG IDLKVGTAKR T
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838433e-98JX583843.1 Gossypium hirsutum clone NBRI_GE16991 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645278.10.0PREDICTED: transcription factor bHLH84-like
SwissprotQ7XHI94e-64BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A1U8HT700.0A0A1U8HT70_GOSHI; transcription factor bHLH84-like
TrEMBLA0A2P5XK570.0A0A2P5XK57_GOSBA; Uncharacterized protein
STRINGGorai.005G231900.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-51bHLH family protein