PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19989_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 276aa    MW: 30865.3 Da    PI: 6.3449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19989_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-152673148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEde l++++k  Ggg+W+t +++ g+  ++k+c++rw +yl
  Cotton_A_19989_BGI-A2_v1.0 26 KGPWTAEEDEVLANYIKIEGGGRWRTLPKRAGLLSCGKSCRLRWMNYL 73
                                79******************************888***********97 PP
2Myb_DNA-binding44.82.9e-1479124148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+  ++E++l+++++++ G++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_19989_BGI-A2_v1.0  79 RGPIAPDEEDLILRLHRLVGNR-WALIAGRIP-GRTDNEIKNYWNTHL 124
                                 566679****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.222173IPR017930Myb domain
SuperFamilySSF466891.5E-2623120IPR009057Homeodomain-like
SMARTSM007172.8E-82575IPR001005SANT/Myb domain
PfamPF002495.4E-122673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-192780IPR009057Homeodomain-like
CDDcd001672.89E-82873No hitNo description
PROSITE profilePS5129423.72874128IPR017930Myb domain
SMARTSM007176.6E-1478126IPR001005SANT/Myb domain
PfamPF002492.7E-1380124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2481129IPR009057Homeodomain-like
CDDcd001673.61E-1184124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKKPILLGTS TVTSRTPCCS KVGIKKGPWT AEEDEVLANY IKIEGGGRWR TLPKRAGLLS  60
CGKSCRLRWM NYLRPTVKRG PIAPDEEDLI LRLHRLVGNR WALIAGRIPG RTDNEIKNYW  120
NTHLSKNLIS QGIDPRTHKP LNPVSHGSSQ ANQDDDDDVP ESNPNPPSSS KSSELMGEKT  180
NSMATTNLES HQIYQHQQEV GDDCMGQPSS SGNGGDLVEN GNEDHMFSLF LDSLITDNQQ  240
QQQQSNNGDL WEAEIMSPMV EFGNPQNYFN HHQQHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23261287108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648653.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A1U8IEU50.0A0A1U8IEU5_GOSHI; transcription repressor MYB5-like
STRINGGorai.013G114900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-76myb domain protein 5