PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_19259_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 203aa MW: 22685 Da PI: 6.7111 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.3e-39 | 18 | 77 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++l+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Cotton_A_19259_BGI-A2_v1.0 18 EANLNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTHGGSLRNVPVGGGSRKNKTSS 77 56799****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 8 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.1E-34 | 20 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.189 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAIGGYSRSS ARVQKGSEAN LNCPRCNSTN TKFCYYNNYS LSQPRYFCKT CRRYWTHGGS 60 LRNVPVGGGS RKNKTSSSKK LDDDHLTHQN PKIHEGDHHQ VINLAYPPVV PAEAYNSSQR 120 LPFMPEIGDA NTGIYSSGFP VLDPGLKFSS DGFGTGYDEN HQGVEENGER LLFPVMEESK 180 QVPMNTMNEL EEDKEQGEST GHW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610486.1 | 1e-153 | PREDICTED: dof zinc finger protein DOF3.7-like | ||||
TrEMBL | A0A1U8LTB8 | 1e-150 | A0A1U8LTB8_GOSHI; dof zinc finger protein DOF3.7-like | ||||
STRING | Gorai.008G267000.1 | 1e-142 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19643 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 2e-38 | Dof family protein |