PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 335aa MW: 37181.1 Da PI: 5.8811

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_18881_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W++++ g+ R+ k+c++rw +yl Cotton_A_18881_BGI-A2_v1.0 14 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.7	1.5e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Cotton_A_18881_BGI-A2_v1.0 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.003	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.66E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.3E-25	65	117	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-13	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.75	66	116	IPR017930	Myb domain
Pfam	PF00249	5.8E-13	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	8.90E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ QHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLNKFQ 120 SALDPHPSIE RKSSLEFAST SSSTSALGLN QVSSAYASST ENISRLLQGW MRSSPKITND 180 NNSSLPLKDT SQYQKWDQNT SLDADSSAGY KPKAEQEGGN LISHEEFESI LSFENINNVV 240 WDKSTCESTS KGACQDSGND DDGDDDDDGG GGGGGGDKVN VAMAPENYKK QKVDHHNNNN 300 KNNPPLSFLE KWLFDESSSG QVEEMNQMME LSSVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-23	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629639.1	0.0	PREDICTED: myb-related protein 306-like
Refseq	XP_017629640.1	0.0	PREDICTED: myb-related protein 306-like
Swissprot	B3VTV7	1e-124	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A0B0NQK4	0.0	A0A0B0NQK4_GOSAR; Myb-related protein
STRING	Gorai.007G252700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	9e-98	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]