PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18125_BGI-A2_v1.0 | ||||||||
Common Name | F383_17021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 40110.2 Da PI: 8.5358 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.2e-53 | 10 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp k++ +ekewyfFs+rd+ky++g r+nra++sgyW Cotton_A_18125_BGI-A2_v1.0 10 LPPGFRFHPTDEELILHYLKKKITSSPFPV-SIIADVDIYKFDPWDLPGKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYW 91 79****************************.89***************888889***************************** PP NAM 84 katgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk ++++ +e++g+kk Lvfykgr pkg kt+W+mheyrl Cotton_A_18125_BGI-A2_v1.0 92 KATGTDKVIVTSsmadrrgeVQENIGVKKALVFYKGRPPKGMKTNWIMHEYRL 144 **********98787776554555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-65 | 4 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.637 | 10 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-28 | 11 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MNMKHPQSSL PPGFRFHPTD EELILHYLKK KITSSPFPVS IIADVDIYKF DPWDLPGKAA 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKVI VTSSMADRRG EVQENIGVKK 120 ALVFYKGRPP KGMKTNWIMH EYRLADNPNS NFNNRPLKSK DSSMRLDDWV LCRIYKKSNA 180 LSSTTAIGAA TSDQDLEEEE AEQFIKDALL PAAIKSPPTT NALLPQKSCS FSNLLDATDY 240 SMLSSFLADN QCNGSGYDPT SFTFEQPLVN NYTIGNNSSS MMMQKLPQLS PSIPNMENKL 300 KRQYSSIDED HPSKKLNSSC SYSNSSTQSD MTHYTFLNQS LFNQSLLLSP HIQFQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-73 | 7 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-73 | 7 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-73 | 7 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-73 | 7 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-73 | 7 | 180 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 5e-73 | 7 | 180 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-73 | 7 | 180 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC110643 | 0.0 | KC110643.1 Gossypium hirsutum NAC protein 8 (NAC8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628145.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | Q84TD6 | 1e-121 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A0B0NJB6 | 0.0 | A0A0B0NJB6_GOSAR; NAC domain-containing 29-like protein | ||||
STRING | Gorai.007G267900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-113 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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