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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_17136_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 268aa MW: 29806.5 Da PI: 4.6364 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_17136_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50 | 6.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l++ + G +W+++++ g++R++k+c++rw +yl
Cotton_A_17136_BGI-A2_v1.0 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++ E++l +d++ +lG++ W++Ia +++ gRt++++k++w+++
Cotton_A_17136_BGI-A2_v1.0 70 LSEAEEQLVIDLHSRLGNR-WSKIAGRLP-GRTDNEIKNHWNTH 111
5899***************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL SEAEEQLVID LHSRLGNRWS KIAGRLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPVTHEPLN KEAEAAENHI SETDGVGADS LEDNSSTPTE NCDNSSTPTE NCSSSVGSNS 180 LDKFCNDESL LSSLWMNDEP PLIDASWDIN IPAGGETCNG ISLPSWEENC AWLLDCQDFG 240 INDFGLDCLN DIELNTMNTL EMADKTVA
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Functional Description ? help
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Source |
Description |
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX580275 | 8e-99 | JX580275.1 Gossypium hirsutum clone NBRI_GE12679 microsatellite sequence. |