PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16006_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 731aa    MW: 79557.4 Da    PI: 6.5912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16006_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.9e-33246303260
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g Hnh+k
  Cotton_A_16006_BGI-A2_v1.0 246 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHSK 303
                                 7****************************************.***************85 PP
2WRKY102.13.3e-32464522159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver++++ k+v +tY g+Hnhe
  Cotton_A_16006_BGI-A2_v1.0 464 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHNLKYVLTTYDGKHNHE 522
                                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-28238304IPR003657WRKY domain
PROSITE profilePS5081123.158240304IPR003657WRKY domain
SuperFamilySSF1182905.75E-26241304IPR003657WRKY domain
SMARTSM007741.0E-36245303IPR003657WRKY domain
PfamPF031065.3E-25246301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-35449524IPR003657WRKY domain
SuperFamilySSF1182907.32E-28457524IPR003657WRKY domain
PROSITE profilePS5081137459524IPR003657WRKY domain
SMARTSM007747.1E-37464523IPR003657WRKY domain
PfamPF031062.3E-24465522IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MDNNVIHFTD PQESVTADDD DQGEGRGPSI AERRAATCGF KAEMICTPTF KSPLGPTSPR  60
LPYFTISPGI SPTALLDSPI MLPNAQASPT TGTFHNHDGI VVNHIKRDRD RSIVSSLTCK  120
TQNMDSRPSL SSVEDQVSAS INLVQNAEVD HQPLVHLDRP SDLKIPSSLS KEATSRSFAA  180
DSVADVGILN NIVNDNANLG FHPSEMGSGQ TSRQKESLNG QDVCTRLLEG DQKGTNTAMG  240
TTRTSEDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCQVKK KVERSLDGQI TEIIYKGAHN  300
HSKPQPCRRP SLGSTLSSEE MSESVEGNGT SVKVEGGLIW RNSQAGSKEI KLGSDWRADG  360
LERTSSSIVT DLSDPLSTAQ GKSVGMFESA ETPEFSSTLA SHDDENDDRA TQGSISLCGD  420
AANDDESESK RRKTESCMTE MNVASSASRE PRVVVQIESD VDILDDGYRW RKYGQKVVKG  480
NPNPRSYYKC TSPGCPVRKH VERASHNLKY VLTTYDGKHN HEVPAARNSS HVNSSGCNLP  540
PTMPNTQAAL SLSRNTHPLK PETPIQDFAP PFDRKPEFKS EYVRPGFLGD FSNEMKLGEA  600
ALASVYQMKF PSIQKAIPYG SFGLNPNCIA SHSSSSIAST VPNFPISLPL NLLTPANLSL  660
AGFDINNVGK STGPIHSFLP GQQLKENGVR FQGIKQELKD DNLYDPSLPI VDHASASSSS  720
VYQQAIGKFP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33234525178Probable WRKY transcription factor 4
2lex_A3e-33234525178Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3311710.0AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614171.10.0PREDICTED: WRKY transcription factor SUSIBA2-like
TrEMBLA0A1U8PIM00.0A0A1U8PIM0_GOSHI; WRKY transcription factor SUSIBA2-like
TrEMBLA0A2P5X6T90.0A0A2P5X6T9_GOSBA; Uncharacterized protein
STRINGGorai.012G028200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17370611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-102WRKY DNA-binding protein 2