PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14104_BGI-A2_v1.0

Common Name

F383_02942

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28157 Da PI: 9.044

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14104_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Cotton_A_14104_BGI-A2_v1.0 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	90.7	2.6e-30	90	175	14	99
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + s++qe+ kLk++++ Lqr+qR+llGedL++Ls keL++Le+qL++slk iRs++++++l+q+++lq+ke+ l+e+nk+L++ Cotton_A_14104_BGI-A2_v1.0 90 ELSSRQEYLKLKARYDALQRSQRNLLGEDLGPLSSKELESLEKQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLNEANKTLKQ 172 45789*****************************************************************************9 PP K-box 97 kle 99 +l Cotton_A_14104_BGI-A2_v1.0 173 RLV 175 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.515	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.1E-33	2	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.06E-45	2	76	No hit	No description
PRINTS	PR00404	8.9E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.9E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.9E-33	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	14.883	90	180	IPR002487	Transcription factor, K-box
Pfam	PF01486	3.0E-25	93	174	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001708	Biological Process	cell fate specification
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0048481	Biological Process	plant ovule development
GO:0048833	Biological Process	specification of floral organ number
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMIKTLERY QKCNYGAPEP NVSSREAALE LSSRQEYLKL KARYDALQRS QRNLLGEDLG 120 PLSSKELESL EKQLDSSLKL IRSTRTQYML DQLNDLQRKE HLLNEANKTL KQRLVEGYQV 180 NSLQLNPNAT EDVGYGRQQV HHQPHGDAFF HPLDCEPTLQ IGYQHDPMSV VTAGPSVNNY 240 MTGWLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	7e-50	75	177	1	104	Developmental protein SEPALLATA 3
4ox0_B	7e-50	75	177	1	104	Developmental protein SEPALLATA 3
4ox0_C	7e-50	75	177	1	104	Developmental protein SEPALLATA 3
4ox0_D	7e-50	75	177	1	104	Developmental protein SEPALLATA 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00605	ChIP-seq	Transfer from AT1G24260	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF538965	0.0	AF538965.1 Gossypium hirsutum MADS box protein GHMADS-1 (MADS-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460219.1	0.0	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Refseq	XP_016694865.1	0.0	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Refseq	XP_016721096.1	0.0	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Refseq	XP_017612638.1	0.0	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Swissprot	Q8LLR0	1e-156	MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBL	A0A0B0PLJ9	0.0	A0A0B0PLJ9_GOSAR; Agamous-like MADS-box protein AGL9
TrEMBL	A0A0D2S4V4	0.0	A0A0D2S4V4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JXA3	0.0	A0A1U8JXA3_GOSHI; agamous-like MADS-box protein AGL9 homolog
STRING	Gorai.012G180300.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6220	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-137	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]