PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_10840_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21740 Da PI: 9.1158 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 14 | 60 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR++i ++f L l+P + kK +K ++L A+eY+k+Lq Cotton_A_10840_BGI-A2_v1.0 14 EHVLAERKRREKISQSFLSLAALIPGL-----KKKDKNSVLGDAIEYLKQLQ 60 6899**********************9.....89*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.653 | 10 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-16 | 14 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-10 | 14 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.52E-11 | 15 | 61 | No hit | No description |
SuperFamily | SSF47459 | 5.1E-15 | 15 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-12 | 16 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MVGSLTRAPL LAQEHVLAER KRREKISQSF LSLAALIPGL KKKDKNSVLG DAIEYLKQLQ 60 ERKARLEEQV AKRTVESVKF VKKTTQFYAQ DDQTSSSDEN FGTQSKNPFP DIEARVSNKD 120 VLIRIHCETN KGCISNIINE VEKLHLSVLN SNALPFGQAT LYITIVAQME DEFSMTLRDL 180 VKTLREGLLN FM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 18 | 23 | ERKRRE |
2 | 19 | 24 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX580413 | 1e-87 | JX580413.1 Gossypium hirsutum clone NBRI_GE12835 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016751185.1 | 1e-140 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q1PF16 | 8e-55 | BH019_ARATH; Transcription factor bHLH19 | ||||
TrEMBL | A0A1U8PJ23 | 1e-138 | A0A1U8PJ23_GOSHI; transcription factor bHLH18-like | ||||
TrEMBL | A0A2P5XX14 | 1e-137 | A0A2P5XX14_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G057800.1 | 1e-132 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22760.1 | 3e-57 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|