PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10286_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 376aa    MW: 42746.5 Da    PI: 8.7234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10286_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-06128151123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                 y+C+ Cg++F +++ L++H +  H
  Cotton_A_10286_BGI-A2_v1.0 128 YVCKVCGRRFYTNEKLVNHFKQiH 151
                                 9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.8E-745131IPR029060PIN domain-like
SuperFamilySSF576671.98E-5126154No hitNo description
SMARTSM003550.0026128151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.071128156IPR007087Zinc finger, C2H2
PROSITE patternPS000280130151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-5132154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061674.90E-12145280No hitNo description
PfamPF019367.3E-6200283IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.8E-7213280IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLHLFPSISN SVQSIIFKTL NPCISLSRLC HFKAKRGFDS LNQTSSVQNS VAVFWDLDNK  60
PPNAFPPFET VVKLKTAASS FGVVRSMVAY ANQHSFSYVP KAVREQRRER KLLNQLENKG  120
VIKSIDPYVC KVCGRRFYTN EKLVNHFKQI HEREHQKRVN QIESARGSRR VKLVGKYSMK  180
MEKYKNAARE VLTPKVGYGL ADELKRAGFW VGTVSNRPQA ADFALRDHIV DVMDKRKAEC  240
LMLVSDDSDF VGVLKEAKLR CLKTVVVGDA DDGALKRVAD AGFSWTEILK GKAKKEAVSV  300
VGKWKDRDIL KKLEWTYDPE VERKFYGSED MFDEESEDLD FDGSDDGNSS DYMHKEDSGA  360
WWELDTDSDA DSSKSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618852.10.0PREDICTED: uncharacterized protein LOC108463387
TrEMBLA0A0D2QXQ90.0A0A0D2QXQ9_GOSRA; Uncharacterized protein
STRINGGorai.007G225400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-148C2H2 family protein