PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_09199_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 297aa MW: 33520.3 Da PI: 6.3637 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.3e-39 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 aCaaCk++rrkC ++C lapyfpa+q+k f+n+hklFG+sn++k+lk+l+++++ +am+s+ y+A++r + PvyG++gvi++l Cotton_A_09199_BGI-A2_v1.0 10 ACAACKYQRRKCIPECLLAPYFPADQTKVFQNAHKLFGVSNIVKILKSLDPSQHAEAMRSIKYQANVRDKFPVYGCLGVIRQL 92 7********************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 q++ l++e +++ + Cotton_A_09199_BGI-A2_v1.0 93 YYQIQLLEEEFHSVLS 108 *********9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.161 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-37 | 10 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MTLKSGTTSA CAACKYQRRK CIPECLLAPY FPADQTKVFQ NAHKLFGVSN IVKILKSLDP 60 SQHAEAMRSI KYQANVRDKF PVYGCLGVIR QLYYQIQLLE EEFHSVLSQL EMYRQYHHEV 120 PSQLELGMAP PTNGLNFLTA VSDMPVSMQH SYSNSNNIGY CSSYVDSKDH NNNNNNSNSN 180 SNNNNNNNSL WIQHPFLATN NSSSSNSNEN NPLMAIQSQL LVSNTQPLVK QHEVVQDYDE 240 LHPFFDTIDD RQSFIHSKEP YDSSCEDSAK EKTQAIELVP NNELKNAAAC FSLTSVH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-30 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-30 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX614899 | 0.0 | JX614899.1 Gossypium hirsutum clone NBRI_GE58613 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617639.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 5e-61 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A0D2S693 | 0.0 | A0A0D2S693_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G034800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-56 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
---|---|---|---|
|