PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07768_BGI-A2_v1.0
Common NameF383_27517
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 687aa    MW: 75755.6 Da    PI: 9.7575
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07768_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.2e-111044136
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                ++ W t+E++ll++av+++G+++W+++a +++ +Rt
  Cotton_A_07768_BGI-A2_v1.0 10 KQTWGTWEELLLACAVHRYGNNSWDSVAMELQ-KRT 44
                                789*****************************.999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-7967IPR001005SANT/Myb domain
SuperFamilySSF466893.84E-5965IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-41045IPR009057Homeodomain-like
PfamPF002493.7E-101045IPR001005SANT/Myb domain
CDDcd001671.26E-61265No hitNo description
SMARTSM002975.7E-12116410IPR001487Bromodomain
SuperFamilySSF473701.96E-15303407IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.8E-12308405IPR001487Bromodomain
CDDcd043698.32E-13315405No hitNo description
PfamPF004392.7E-9319394IPR001487Bromodomain
PROSITE profilePS5001413.589320391IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAKPHSFPDK QTWGTWEELL LACAVHRYGN NSWDSVAMEL QKRTSTFQHL FFTPLSCQQK  60
FQDLKRRFAE NDNDDGETTN NNNSTITVPW LDELRRLRVA ELRREVQQYD LSIVSLQMKV  120
QKLKEEREQS LTKNGKETEK SDLEREKGSE KKEENETENI TRRPVNSREE SERENHSVNE  180
SNSTDPKEES PGTVPDEAKD EPEPVEPDGG ETGKEVQSVK PGGEASCNGS CDSVAKGSAE  240
NSERVDPRET GDSPESVAES KGEEPNRESS DVQSSASLSG KEKKNDEPDE TDNGELDQSP  300
SIKKVSVESQ PLVAFLEIFR SHKLGSFFER RLGSQKTPDY SNLIRQHLDL ETIGMRVEEG  360
WYSGCKSKFF RDLLLLLTNA IIFFGKESSE YAAAIEFRQL VSKEIGTQFR NSSVLPKEQS  420
SSRVPESQMS LKPEPQLSVS LSMKPKLSVP LIACRKRSSI TAKSSTSSSG QEKKRQLLAS  480
LMNEKPALGW KQHDKSTEES PVAKKRTRES SASGSRKASK NAKARSNTNT SKNPGTNTNA  540
AISSKGGSSN DNSESKGGEK EKSNSKTASS KKPSAANFLN RMRSSLSGNE PLTETLKGVI  600
TSDKGKGGGD AGEHKKNSAS SKGDQQKDRT PTTRTRSGGK RTSPPKRSTG RPPKRVPATQ  660
SAPPGKRGRE AVENHSGGGQ AKKRSRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5802541e-99JX580254.1 Gossypium hirsutum clone NBRI_GE12650 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611617.10.0PREDICTED: uncharacterized protein LOC108457206
TrEMBLA0A2P5WUC90.0A0A2P5WUC9_GOSBA; Uncharacterized protein
STRINGGorai.006G142300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-90DNA-binding bromodomain-containing protein