PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07719_BGI-A2_v1.0 | ||||||||
Common Name | F383_07268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 216aa MW: 24040.4 Da PI: 7.5318 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.5 | 8.2e-71 | 11 | 177 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfk.vvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeen 81 d+ s ++q+Cyv+CnfC+t+lavsvP +slf+ +v vrCGhCt+llsv+++ +a + hl +s+ + llee ++ Cotton_A_07719_BGI-A2_v1.0 11 DHLSPADQLCYVHCNFCDTVLAVSVPCSSLFNnTVMVRCGHCTNLLSVDMRGLLLPTANQLHLAHSFFTPqnLLEEIRSCAP- 92 688999************************9549****************99999999999999998766335555554332. PP YABBY 82 lksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164 ++ ++++ +++ +v e ee++++p v+rPPekrqrvPsaynrfikeeiqrika+nPdishr+afsaaaknWahfP Cotton_A_07719_BGI-A2_v1.0 93 PNMVMINHPNPNDTVIR---GAAELEEIAKPPVVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHRDAFSAAAKNWAHFP 172 23333333333332222...57899*****999************************************************** PP YABBY 165 kihfg 169 +ihfg Cotton_A_07719_BGI-A2_v1.0 173 RIHFG 177 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-67 | 15 | 177 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.68E-8 | 122 | 172 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.2E-4 | 126 | 172 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSSSSVSFSS DHLSPADQLC YVHCNFCDTV LAVSVPCSSL FNNTVMVRCG HCTNLLSVDM 60 RGLLLPTANQ LHLAHSFFTP QNLLEEIRSC APPNMVMINH PNPNDTVIRG AAELEEIAKP 120 PVVNRPPEKR QRVPSAYNRF IKEEIQRIKA GNPDISHRDA FSAAAKNWAH FPRIHFGQMP 180 DQAVMKMKNN VRQQEGEEAV VKDGFFVPTN VGVSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016695371.1 | 1e-161 | PREDICTED: axial regulator YABBY 1-like | ||||
Refseq | XP_017614212.1 | 1e-161 | PREDICTED: axial regulator YABBY 1-like | ||||
Swissprot | O22152 | 7e-84 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A0B0P5Z7 | 1e-160 | A0A0B0P5Z7_GOSAR; Axial regulator YABBY 1-like protein | ||||
TrEMBL | A0A1U8JYL7 | 1e-160 | A0A1U8JYL7_GOSHI; axial regulator YABBY 1-like | ||||
TrEMBL | A0A2P5XPH9 | 1e-160 | A0A2P5XPH9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G089700.1 | 1e-160 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2217 | 28 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 9e-83 | YABBY family protein |