PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02366_BGI-A2_v1.0 | ||||||||
Common Name | F383_30671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 533aa MW: 59329 Da PI: 5.8611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 3e-53 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksg 81 lp G+rF+Ptdeel+++yL++kv+gk+ ++ vi+evd++k+ePwdLp+ +vka++ ew+fF++ d+ky++g+r nrat++g Cotton_A_02366_BGI-A2_v1.0 9 LPIGIRFRPTDEELIDFYLRAKVNGKRKDEIGVIREVDVCKCEPWDLPHlsAVKARDPEWFFFCPLDRKYPNGNRLNRATEAG 91 699************************999899***************4448888999************************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr Cotton_A_02366_BGI-A2_v1.0 92 YWKATGKDRKIKS-GSCLIGMKKTLVFYTGRAPKGKRTNWVMHEYRT 137 *************.99*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-60 | 4 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.578 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MAVISLNSLP IGIRFRPTDE ELIDFYLRAK VNGKRKDEIG VIREVDVCKC EPWDLPHLSA 60 VKARDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSCLIG MKKTLVFYTG 120 RAPKGKRTNW VMHEYRTTLD ELDGTKPGQN PFVICRLFKK QDETIEDING DDVDPGASSH 180 TEEVQSEFDG PSVEGGAGKV PDGGAGKVPD ETRPVGLCNE AVAPIFDCNN DGFNACELEE 240 TAPAQVDLLG EALFQICDPM MEPLDWKLFS PLHSQIEAEG APWMFDHVGN SFGGVKFEHG 300 TNENDAEFMN SILNNSDDYY SDDSSSRRNS VIETETPKSM AFGTNGGLYC KPDAEPARVL 360 PGTGTANGGA FYNVLNSNGE PSNHVNTACN VDTAPTIRIR SRAHRIQPDT ENFDTQGIAS 420 RRCKLVVHSP RFEEKEHDSK PILTKGVKAM EEYISVGNDA ARRTMDEPQI FETSKRDVLR 480 SKSKIPVSEA VSYRCLKRFS ARRQHKPFSV IMFRVVAVML ILFVALVSTL NVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-41 | 8 | 163 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847226 | 0.0 | KC847226.1 Gossypium hirsutum NAC domain protein NAC49 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017607809.1 | 0.0 | PREDICTED: NAC domain-containing protein 91-like | ||||
TrEMBL | A0A0B0N0D7 | 0.0 | A0A0B0N0D7_GOSAR; NAC domain-containing 78-like protein | ||||
STRING | Gorai.007G017500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 5e-90 | TCV-interacting protein |