PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01867_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21934.2 Da PI: 7.0089 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.3 | 8.2e-13 | 5 | 54 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ r ++fsk i KK +ELS+LC+ e++ iifs++gk y ++ Cotton_A_01867_BGI-A2_v1.0 5 KIIENEDDRLISFSKLCFEICKKIFELSTLCGSEILFIIFSPKGKPYSFA 54 579******************************************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-12 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-17 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.236 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-16 | 7 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-5 | 19 | 34 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-5 | 34 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
KIEIKIIENE DDRLISFSKL CFEICKKIFE LSTLCGSEIL FIIFSPKGKP YSFAHHSIES 60 FTKRFLNPNQ PLHETIDAPV EAYYKVRIKL LVQDYNEVHD QLDASKEKQK AFSLVQQSCE 120 SKSHHWWKTP IDQLNLRELH ERDKHFAEFI NLISVTRDKK IASISSMHAA MDEDVPFVVP 180 PRYGLSLQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483076.1 | 1e-113 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P5YSG8 | 1e-111 | A0A2P5YSG8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G132000.1 | 1e-109 | (Gossypium raimondii) | ||||
STRING | Gorai.006G132100.1 | 1e-111 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 9e-21 | AGAMOUS-like 57 |