PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022531
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 396aa    MW: 44852.7 Da    PI: 8.458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022531genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.5e-21341121397
                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +++lv+p+kf ++ +  k+ + t+tl+ +sg +W+v l  + ++++ ++++GW+eFvka+ L+++D +vF+++g+s+f   v vf
  Cla022531  34 EQQLVIPNKFSKNLK--KKLPATVTLKGPSGATWDVGL--TTSDDKLYFKRGWQEFVKAHSLEQNDLLVFRYNGTSQF--DVLVF 112
                578*******85445..56999****************..**********************************9999..66666 PP
2B342.11.5e-13275370197
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvf 97 
                f+ v+ ps+v ++  l +p + ++++  +    +++++l+   + +W  k++++ +++   lt+GWk+F  +n+L+e D++vF+ + +      l vk+f
  Cla022531 275 FKVVMRPSHVYRRFFLFIPTQWVTKNlALR---NQDIILRV-GSDEWPAKFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVTKssGPVVLEVKIF 370
                778999********************6433...34677766.6688999999877777777***********************6644134444555665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
SuperFamilySSF1019367.85E-2320115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.94722115IPR003340B3 DNA binding domain
SMARTSM010197.6E-1225115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-2328113IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-1835111IPR003340B3 DNA binding domain
CDDcd100179.73E-2136113No hitNo description
Gene3DG3DSA:2.40.330.101.8E-16273371IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.364275373IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-16275363IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-13275373IPR003340B3 DNA binding domain
PfamPF023624.4E-12275371IPR003340B3 DNA binding domain
CDDcd100171.31E-18275371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDKVGDSSNK WAEDIYWSHF QFTHFYQILA GGCEQQLVIP NKFSKNLKKK LPATVTLKGP  60
SGATWDVGLT TSDDKLYFKR GWQEFVKAHS LEQNDLLVFR YNGTSQFDVL VFDWKSFCEK  120
EASYFVKICE NKKSDSGCQA KRKFREPSLD GFDANTNNGA ECDSSENIIH DDSMERMIQD  180
VVSKATNFNG QPEVFSAEPI RTVQTRRKKK TPNNAAIMTS TPEHVQLSDS DVEATPVKKI  240
GSYVEHYVSN RRAITEGEKN NALKLAEAAS SDAGFKVVMR PSHVYRRFFL FIPTQWVTKN  300
LALRNQDIIL RVGSDEWPAK FNFTPSRQCG GLTSGWKHFS IDNNLEEFDV CVFEPVTKSS  360
GPVVLEVKIF RVVEDVTPLT RVASKSNRKL IKAPEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1424337616146B3 domain-containing transcription factor VRN1
4i1k_B3e-1424337616146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152721.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0A0LRE70.0A0A0A0LRE7_CUCSA; Uncharacterized protein
STRINGXP_004152721.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-76B3 family protein