PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla022531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | B3 | ||||||||
Protein Properties | Length: 396aa MW: 44852.7 Da PI: 8.458 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.9 | 1.5e-21 | 34 | 112 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++lv+p+kf ++ + k+ + t+tl+ +sg +W+v l + ++++ ++++GW+eFvka+ L+++D +vF+++g+s+f v vf Cla022531 34 EQQLVIPNKFSKNLK--KKLPATVTLKGPSGATWDVGL--TTSDDKLYFKRGWQEFVKAHSLEQNDLLVFRYNGTSQF--DVLVF 112 578*******85445..56999****************..**********************************9999..66666 PP | |||||||
2 | B3 | 42.1 | 1.5e-13 | 275 | 370 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvf 97 f+ v+ ps+v ++ l +p + ++++ + +++++l+ + +W k++++ +++ lt+GWk+F +n+L+e D++vF+ + + l vk+f Cla022531 275 FKVVMRPSHVYRRFFLFIPTQWVTKNlALR---NQDIILRV-GSDEWPAKFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVTKssGPVVLEVKIF 370 778999********************6433...34677766.6688999999877777777***********************6644134444555665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 33 | No hit | No description |
SuperFamily | SSF101936 | 7.85E-23 | 20 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.947 | 22 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-12 | 25 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-23 | 28 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-18 | 35 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.73E-21 | 36 | 113 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-16 | 273 | 371 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.364 | 275 | 373 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.75E-16 | 275 | 363 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-13 | 275 | 373 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-12 | 275 | 371 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.31E-18 | 275 | 371 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDKVGDSSNK WAEDIYWSHF QFTHFYQILA GGCEQQLVIP NKFSKNLKKK LPATVTLKGP 60 SGATWDVGLT TSDDKLYFKR GWQEFVKAHS LEQNDLLVFR YNGTSQFDVL VFDWKSFCEK 120 EASYFVKICE NKKSDSGCQA KRKFREPSLD GFDANTNNGA ECDSSENIIH DDSMERMIQD 180 VVSKATNFNG QPEVFSAEPI RTVQTRRKKK TPNNAAIMTS TPEHVQLSDS DVEATPVKKI 240 GSYVEHYVSN RRAITEGEKN NALKLAEAAS SDAGFKVVMR PSHVYRRFFL FIPTQWVTKN 300 LALRNQDIIL RVGSDEWPAK FNFTPSRQCG GLTSGWKHFS IDNNLEEFDV CVFEPVTKSS 360 GPVVLEVKIF RVVEDVTPLT RVASKSNRKL IKAPEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-14 | 243 | 376 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-14 | 243 | 376 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152721.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A0A0LRE7 | 0.0 | A0A0A0LRE7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004152721.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-76 | B3 family protein |