PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla021275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 581aa MW: 67355.1 Da PI: 6.9782 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 375 | 415 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE el + + ++G++ Wk a+ +g + + ++k+ w+ Cla021275 375 KWTPEEYELVRKFHDKHGSD-WKVLAEVLG--KHRVHVKDTWRR 415 8*******************.********8..788999999886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50181 | 9.63 | 1 | 44 | IPR001810 | F-box domain |
SuperFamily | SSF81383 | 6.8E-12 | 2 | 61 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 1.1E-7 | 2 | 44 | No hit | No description |
Pfam | PF12937 | 3.7E-6 | 2 | 43 | IPR001810 | F-box domain |
SMART | SM00256 | 1.1E-4 | 4 | 44 | IPR001810 | F-box domain |
SMART | SM00717 | 0.0023 | 299 | 370 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 0.014 | 372 | 419 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-9 | 374 | 434 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.609 | 375 | 417 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 375 | 427 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.0E-11 | 376 | 434 | No hit | No description |
PROSITE profile | PS50090 | 7.735 | 418 | 486 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1 | 422 | 488 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.39E-5 | 423 | 542 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 428 | 487 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.201 | 488 | 541 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 581 aa Download sequence Send to blast |
MENLPVECIS HILGFTSPKD VCRSAGVSSA FRSAADFELL WKTFLPEDYR NTIAMSSSLP 60 PPYLNSLSAK ALYFLLSDHP LFIKVENSMT TSELIAQDEE VTHTKMQMQT MKNTKEPDGS 120 DKNDEEKKKK KKKKKKQKEH KIQEDEQKEE IESDTEHRVK NEEIESEAEP CVKKDDEMQK 180 KKKAKLPEGI DENNCKSGPD SGREKKKKKQ NTEDSKESSR HITKEKKRKK TKSVEDGSLE 240 KVREGGAGSR EHEEISSPPE RLSPKRSSKK VKFSEDVEIF PLVDVESSGK TKQDDGLIRG 300 KRFSKEEDEI VKMAVLQYIE EHALGDEGLK KVLHCKEFPE VKNCWKDIGK AIPYRPYLSV 360 YYRAHILFER DETRKWTPEE YELVRKFHDK HGSDWKVLAE VLGKHRVHVK DTWRRIKLPN 420 MKKGQWTQDE YQKLFDLVNK DLRLKAYEEK RSKHGMLRDN ICWGAISDKL STRSTALCCQ 480 KWYGQLTSPM VAEDEWADVD DYRLIDALSS LDACSIEDVE WDQLLEHRSG DVCRKRWSQM 540 VKHIGDNGNK SFSEQVEVLS ERYSIDVLDA REAYDNAPIV D |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 126 | 135 | KKKKKKKKKK |
2 | 127 | 135 | KKKKKKKKK |
3 | 129 | 135 | KKKKKKK |
4 | 201 | 209 | GREKKKKKQ |
5 | 206 | 228 | KKKQNTEDSKESSRHITKEKKRK |
6 | 225 | 229 | KKRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438110.1 | 0.0 | PREDICTED: RNA polymerase I termination factor | ||||
TrEMBL | A0A1S3AVK4 | 0.0 | A0A1S3AVK4_CUCME; RNA polymerase I termination factor | ||||
STRING | XP_008438110.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-131 | MYB_related family protein |