PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla020817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ARF | ||||||||
Protein Properties | Length: 948aa MW: 104625 Da PI: 5.4179 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.2 | 1.8e-24 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++++ +l+ Cla020817 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDEKSQLL 244 99*********************999*****954444.4.38************************************************..4577778* PP EEEE-S CS B3 94 vkvfrk 99 ++v+r+ Cla020817 245 IGVRRA 250 ***997 PP | |||||||
2 | Auxin_resp | 113.5 | 2e-37 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ Cla020817 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358 79*********************************99*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.42E-47 | 136 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-42 | 142 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-22 | 148 | 249 | No hit | No description |
Pfam | PF02362 | 7.6E-22 | 149 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-24 | 149 | 251 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.126 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-32 | 275 | 358 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 25.592 | 834 | 918 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.43E-9 | 836 | 913 | No hit | No description |
Pfam | PF02309 | 2.0E-7 | 879 | 921 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 948 aa Download sequence Send to blast |
MGSVEEKLKT SGGLINNGPQ TNLLDEMKLL KEMQDQTGAR KAINSELWHA CAGPLVSLPH 60 VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQNVTLHAD KDSDEIYAQM 120 SLQPVNSEKD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY 180 TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK 240 SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI 300 PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE 360 WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLGETDWGS LVKRPMLRVP 420 ENIRGDLSYA PTLCSEPLMK MLLRPQMVNL QGTTLQQDSV NNLVKIQDMK DMQPVTKMQQ 480 LIPSETASPG NQNHHHHPAP TQSDVINPNS SPKENLPGKV HTSAAIESEA PTAADVDKAK 540 YERDLSTNQS NPLPSVGDCG EEKLTGNEVN MQTLVNQLSF VNQNQIPMQL QSVSWPMQPQ 600 LESLIQHPQP TDMSQPEFTN SNGLISSLDG DGCLINPSCL PLPGVMRSPG NLSMLGLQDS 660 STVFPEALNF PLPSTGQDMW DPLNNIRFSS QTNHLVSFSH PDVSNLNCMA NANIMRDVSD 720 ESNNQSGIYS CSNLEISNGG STLVDHAVSS TILDDYCTLK DAHFPHPSDC LAGNFSSSQD 780 VQSQITSASL GDSQAFSRQE FHDNSGGTSS CNVDFDEGSL LQNGSWKQVV PPLRTYTKVQ 840 KAGSVGRSID VTSFKNYDEL CSAIECMFGL EGLLNDPRGS GWKLVYVDYE NDVLLIGDDP 900 WEEFVSCVRC IRILSPSEVQ QMSEEGMKLL NSPMMQGINC SMSEGGRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 383 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323419 | 0.0 | KU323419.1 UNVERIFIED: Trichosanthes dioica clone TdARF_27 auxin response factor 5-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652441.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X2 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A0A0LE69 | 0.0 | A0A0A0LE69_CUCSA; Auxin response factor | ||||
STRING | XP_004154860.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |