PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020398
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 202aa    MW: 21970.3 Da    PI: 8.3539
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020398genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-282103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C++lr++C++dC+++p++     +++q++++ +++k++G++ + +l++a+ ++ r+++++sl+yeA+ r+ +PvyG+vg++ ++ ++ +q++++++
  Cla020398   2 SCNGCRILRKGCSDDCIIRPCLqwipsADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAV 101
                6*********************9996445779***************************************************************99987 PP

     DUF260  96 ll 97 
                l 
  Cla020398 102 LN 103
                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.4251107IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSCNGCRILR KGCSDDCIIR PCLQWIPSAD SQANATIFLA KFYGRAGLFN LITAAAQHLR  60
PAIFKSLLYE ACGRMVNPVY GSVGLLCSGD WERCQAAVDA VLNGSMNVEP EAPPSNNANL  120
SLKCCDIRHV CNDPNLAASG ELLKVKARSR FKKPDHRTKP KPESVPELGI GPSVEEPGRV  180
LRNGSRFEKG DVELELTLKS AQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-124LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-124LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135401.11e-131PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9CA303e-62LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0A0KUI01e-130A0A0A0KUI0_CUCSA; Uncharacterized protein
STRINGXP_004164162.11e-131(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-64LOB domain-containing protein 42