PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020334
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 200aa    MW: 22958.7 Da    PI: 6.7401
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020334genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-1583139561
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++  +k+  
  Cla020334  83 RKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHKLIDKLNHVSDSHEKVLL 139
                79**********************************************999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-1579143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.73781144IPR004827Basic-leucine zipper domain
PfamPF001702.5E-1383141IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-1283156No hitNo description
SuperFamilySSF579595.63E-1383133No hitNo description
CDDcd147021.73E-1984134No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLPGEMTGIQ FFPSENSFQI PSNIGMMQNS FQTLHHFNSF LGNLPMSHVP HPSHEFLAQS  60
SSFSYNSTSD DAEEQQKSII DERKQRRMIS NRESARRSRM RKQKHLDELW SQVLRLRTEN  120
HKLIDKLNHV SDSHEKVLLE NARLKEEASD LRQMLSDLQI GSPYTPCLSN LEDIPCNSAH  180
LRAESSSCQS IANSIDNLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900227.11e-132PREDICTED: basic leucine zipper 43
SwissprotQ9FMC28e-40BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S4DW641e-131A0A1S4DW64_CUCME; basic leucine zipper 43
STRINGXP_008446497.11e-132(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-44basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]