PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020132

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 318aa MW: 35607.8 Da PI: 7.5354

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020132	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk++rrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l +k+e Cla020132 7 PCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKE 106 7********************************************************************************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.719	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSSSNSPCAA CKIQRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQSDL YNAKKELASY IGPQAMLPIL 120 QPQPQPPTPT PSSSALLPYN ISPMLAIPPS AAPGSSQQML IPPQHQMQQQ QQQQQLFEAQ 180 QLAAAVAARE QQEMFRAYEH KQSHHHHQQQ QRQHELLRFN GFDAGGGFNN QMNSSPSNLT 240 LGTFVDNTYQ IQTQPEHSHS HSHSHSHSHS PLQVQLFLQP QQTQLDQPQH PHPHQSHKPE 300 TTPADDGRNN NINIGPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-47	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-47	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681913	1e-115	LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBank	LN713265	1e-115	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023007222.1	1e-138	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-84	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A0B0PS92	1e-113	A0A0B0PS92_GOSAR; LOB domain-containing 36-like protein
STRING	Gorai.007G210500.1	3e-99	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-64	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]