PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018596

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 332aa MW: 37483.6 Da PI: 9.3467

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018596	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.3	2.1e-55	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL kkv + ++++ + i evd++k+ePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++lv Cla018596 17 LPPGFRFHPTDEELISHYLSKKVVDANFSC-KPIGEVDLNKSEPWDLPWKAKMGEREWYFFCLRDRKYPTGLRTNRATESGYWKATGKDKEIYR-GKTLV 114 79**************************.88***********888999************************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy grapkgek++Wvmhe+rle Cla018596 115 GMKKTLVFYGGRAPKGEKSNWVMHEFRLE 143 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-62	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.532	17	167	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEQNMTAPVL EDSQIVLPPG FRFHPTDEEL ISHYLSKKVV DANFSCKPIG EVDLNKSEPW 60 DLPWKAKMGE REWYFFCLRD RKYPTGLRTN RATESGYWKA TGKDKEIYRG KTLVGMKKTL 120 VFYGGRAPKG EKSNWVMHEF RLEGKPSAIN LPNTAKNEWV ISRVFQKSCG GKKVHISGLV 180 KLGSCSSALP PLKDSSSSSS SFKIKPVPEL THVPCFSNTM DSTQRTLPKI NDCSFNFSSF 240 FPTIFQRNTQ PNPLHNPQSI SSFPLNLQFQ NMVRTEGEGR ISVSQETGLT TDMNNEISSV 300 VSNLEMGRLP FDNQHNPSAS TVPLNPHIVW NY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-54	13	173	16	174	NAC domain-containing protein 19
3swm_B	2e-54	13	173	16	174	NAC domain-containing protein 19
3swm_C	2e-54	13	173	16	174	NAC domain-containing protein 19
3swm_D	2e-54	13	173	16	174	NAC domain-containing protein 19
3swp_A	2e-54	13	173	16	174	NAC domain-containing protein 19
3swp_B	2e-54	13	173	16	174	NAC domain-containing protein 19
3swp_C	2e-54	13	173	16	174	NAC domain-containing protein 19
3swp_D	2e-54	13	173	16	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137588.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-129	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0A0LVJ8	0.0	A0A0A0LVJ8_CUCSA; Uncharacterized protein
STRING	XP_008444101.1	0.0	(Cucumis melo)
STRING	XP_004173604.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-130	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]