PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018268
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 441aa    MW: 48980.6 Da    PI: 7.9634
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018268genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16114163155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cla018268 114 SEYRGVTYYRRTGRWESHIWD------SgKQVYLGGFDTAHSAARAYDRAAIKFRG 163
                569******************......44************************997 PP
2AP244.24.7e-14217267155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k++g
  Cla018268 217 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKYNG 267
                89********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-16114173IPR016177DNA-binding domain
CDDcd000183.00E-23114173No hitNo description
SMARTSM003807.8E-30115177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17115171IPR001471AP2/ERF domain
PfamPF008479.0E-10115163IPR001471AP2/ERF domain
PROSITE profilePS5103217.662115171IPR001471AP2/ERF domain
CDDcd000188.44E-25217277No hitNo description
SuperFamilySSF541714.97E-17217276IPR016177DNA-binding domain
PfamPF008471.5E-9217267IPR001471AP2/ERF domain
SMARTSM003809.0E-30218281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-16218276IPR001471AP2/ERF domain
PROSITE profilePS5103216.12218275IPR001471AP2/ERF domain
PRINTSPR003671.5E-6219230IPR001471AP2/ERF domain
PRINTSPR003671.5E-6257277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLDLNLCILS GDSSSGGTGL NPFNLSAPGV QSPISSSVVN ADQSNVIGDY GSSSNADCGF  60
TFSFSILNNS NDDQRGRTVA GRFSSDVYSQ RKWMVQQSVH PAKKGRRGPK SRSSEYRGVT  120
YYRRTGRWES HIWDSGKQVY LGGFDTAHSA ARAYDRAAIK FRGVHADINF NISDYSEEIK  180
QLCFGASMAD MQMSNFSKEE FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK  240
KYVYLGLFDS EIEAARAYDK AAIKYNGREA VTNFDQSSYE MEIAFESQNQ DMGDIDLNLG  300
IAPPCPSEDQ KDNLNVCATN FCSLNKSDSD RSELIMLENH SSVAVRAHPS FMSCPNFFPT  360
YQGRAMEKIM EVETLPNWGW RQIPISYGGA TSVPFFSTAA SSGFPSSPAA QLPPHLLRPA  420
PPFLRYHFPP TNSVPHFYCS T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818429e-69LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132599e-69LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142222.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotB8B8J26e-97AP23_ORYSI; APETALA2-like protein 3
TrEMBLA0A0A0L2100.0A0A0A0L210_CUCSA; Uncharacterized protein
STRINGXP_004166397.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-81related to AP2.7