PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018059
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 276aa    MW: 31089.4 Da    PI: 6.245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018059genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.46.8e-24120181159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +dDg++WrKYGqK++ ++++pr+YYrCt++    C+++k+v+r ++ p  + +tY g+H+++
  Cla018059 120 VDDGHAWRKYGQKTILNAKYPRNYYRCTHKfdqACQATKQVQRLQDHPPKFRTTYYGHHTCS 181
                59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-24106181IPR003657WRKY domain
PROSITE profilePS5081120.185115178IPR003657WRKY domain
SuperFamilySSF1182902.22E-23117181IPR003657WRKY domain
SMARTSM007747.3E-36120182IPR003657WRKY domain
PfamPF031062.8E-24121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDCSWPDTTP SDRRKAADEL LRGRELAQQL RAYLQRTSNS GGTASQDLLS RILTSFSKTL  60
SILNRCDSDD INGSIVDSPE DRASRKSQES GDSCKSSDRR GCYKRRKSCQ SWARESCSLV  120
DDGHAWRKYG QKTILNAKYP RNYYRCTHKF DQACQATKQV QRLQDHPPKF RTTYYGHHTC  180
SNFLKASDIV LGSSNFDDSC GVLLSFDTPA APNFLLQQDA MLVKKEVAIA ESRDDEAVCS  240
PSDYISTAEP SPDDHLSEVF MGSVVDFEDD VLQFQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-22120180868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840210.0GU984021.1 Cucumis sativus WRKY protein (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442314.11e-168PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S3B5E31e-167A0A1S3B5E3_CUCME; probable WRKY transcription factor 70
STRINGXP_008442314.11e-168(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-40WRKY DNA-binding protein 70