PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017973
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 313aa    MW: 36482.8 Da    PI: 9.4669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017973genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-062141323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+dCg  F+ + +Lk+H+++H
  Cla017973 21 CQDCGADFKKPVYLKQHMQSH 41
               *******************99 PP
2zf-C2H2163.4e-054771123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               y C+   C  s++r+++L+rH+  H
  Cla017973 47 YICSvdGCQASYRRRDHLTRHLLQH 71
               899999***************9887 PP
3zf-C2H215.74.2e-05115139123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++Cp   C k+F+  s L++H   H
  Cla017973 115 FVCPkdGCRKVFRYASRLQKHEDFH 139
                89*******************8776 PP
4zf-C2H211.70.00079215231823
                EEESSHHHHHHHHHH.T CS
    zf-C2H2   8 ksFsrksnLkrHirt.H 23 
                k+Fs+ snL++H+++ H
  Cla017973 215 KVFSSISNLRQHMKVnH 231
                99************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.4891946IPR007087Zinc finger, C2H2
SMARTSM003550.081941IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-62147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.78E-103373No hitNo description
SMARTSM003550.00144771IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1824773IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-104873IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804971IPR007087Zinc finger, C2H2
SMARTSM003552.376101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-6113139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.015115139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889115144IPR007087Zinc finger, C2H2
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SMARTSM003558.4147172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149172IPR007087Zinc finger, C2H2
SMARTSM003556.5175197IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.6E-8191244No hitNo description
SMARTSM0035525206231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536206236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-5214239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035525237263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSGQPKDDAN VKSKGGKSNI CQDCGADFKK PVYLKQHMQS HSFRRPYICS VDGCQASYRR  60
RDHLTRHLLQ HQGIVFKCPI ESCSHESAYV SSVNRHLKEF HEDNVAPEVE CQKQFVCPKD  120
GCRKVFRYAS RLQKHEDFHV KLDSIEAYCA ELGCMKSFTN KQCLTAHRQS CHKYIKCEIC  180
GKRKLRKNIK QHLRQKHESE GPQKTIQCMH ESWTKVFSSI SNLRQHMKVN HLGQKPFACG  240
FSGCRMRFGY KHFRDNHEKS SLHVYTNGDF EVADEQFRSK PRGGRKRKCP TVEMLIRKRV  300
TPQACDFMMD EEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-112314019160PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-112314019160PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-82LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-82LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023542929.11e-172transcription factor IIIA-like
SwissprotQ84MZ41e-104TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0A0KV541e-165A0A0A0KV54_CUCSA; Uncharacterized protein
STRINGXP_008446968.11e-164(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-106transcription factor IIIA