PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017848
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 437aa    MW: 48380.7 Da    PI: 6.4422
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017848genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-17159208155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cla017848 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                78*******************......55************************997 PP
2AP2431.2e-13251301155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+++ +g
  Cla017848 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALRCNG 301
                89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.43E-11159217No hitNo description
PfamPF008472.8E-9159208IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16159217IPR016177DNA-binding domain
PROSITE profilePS5103217.754160216IPR001471AP2/ERF domain
SMARTSM003802.6E-31160222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-17160216IPR001471AP2/ERF domain
CDDcd000182.61E-24251311No hitNo description
SuperFamilySSF541711.7E-16251310IPR016177DNA-binding domain
PfamPF008473.2E-9251301IPR001471AP2/ERF domain
SMARTSM003802.2E-29252315IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-16252309IPR001471AP2/ERF domain
PROSITE profilePS5103215.461252309IPR001471AP2/ERF domain
PRINTSPR003674.6E-6253264IPR001471AP2/ERF domain
PRINTSPR003674.6E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MLDLNLEVVS SESASDSVEM VTERFLQFPA NRMESAGSFN SSSVVNGDLS ASTTGDEDSS  60
SNADEAFPFT FVKDSAVQES LTAKSLCVFD DPRDQTMELF PLTGGFSSGS SPQKRWPEVS  120
PPEFGYCGGV PERRINAPPA QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGID ADINFNVCDY DEDIKQMSNF TKEEFVHILR  240
RHSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAALRCN  300
GKEAVTNFEP SSYVAEMASE TNTGENNQIL DLNLGIAPPN LSDVRSESIG MFGNGIHRSS  360
HDIIVDRRAM ERATEMRMGV GSWEWQIHGH PSETSVPRFS AAASSGFPSS SSSSTVISSA  420
SPAVGEIHFP AIFYCRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442633.10.0PREDICTED: floral homeotic protein APETALA 2-like
TrEMBLA0A1S3B6530.0A0A1S3B653_CUCME; floral homeotic protein APETALA 2-like
STRINGXP_008442633.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-100related to AP2.7