PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015834

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB

Protein Properties

Length: 251aa MW: 28076 Da PI: 9.0422

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015834	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Cla015834 14 KGAWTKEEDDRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.7	1.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+ Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++ Cla015834 67 RGNFTQHEDDLIIKLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.745	9	61	IPR017930	Myb domain
SMART	SM00717	1.2E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.8E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.00E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.048	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.00E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TQHEDDLIIK LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPTTHRPIT DVSSSAKPPA TTISFASNSA LEDQEDRKKP IINNFSPPRD EGLLDLNLDL 180 RISPPPYPTA VTMKNEGRNS LCFFCSLGFE NSKNCSCGNG KIIASSDSNG NGYDFLGLKS 240 CVLDCRSLEI K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681798	0.0	LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144840.1	1e-172	PREDICTED: myb-related protein 308-like
Swissprot	P81393	1e-109	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A1S3BJJ8	1e-166	A0A1S3BJJ8_CUCME; myb-related protein 308-like
STRING	XP_004162908.1	1e-171	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-105	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]