PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013252
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 490aa    MW: 53373 Da    PI: 7.3962
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013252genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17156205155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cla013252 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-16156214IPR016177DNA-binding domain
PfamPF008474.0E-9156205IPR001471AP2/ERF domain
CDDcd000189.76E-24157215No hitNo description
Gene3DG3DSA:3.30.730.103.3E-17157214IPR001471AP2/ERF domain
SMARTSM003806.3E-32157219IPR001471AP2/ERF domain
PROSITE profilePS5103217.649157213IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-6259303IPR016177DNA-binding domain
CDDcd000181.40E-13259304No hitNo description
SMARTSM003801.9E-13260308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MFDLNLNVDS PDASQNENSV VFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS  60
TRAGGELFTF SFEILKAGSA NDVVTKELFP IGGALNADFG ILQGHNSASS SSTSSRKNWI  120
NLAFDRSGSA GEGRVVQPVQ PQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFNLSDYEDD LKQFPVSIDN ILEQMKNLSK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQLL GKKAYDKAAI KCNGREAVTN  300
FEPSTYGERI SEGGSEGGRN MLDLNLGISP PSLNNCPKDT EGHLRFQSGP CYANDRSTMM  360
ESNADAAVSD PPLKGPVMTS EHAPLWNGLQ TSFFPSEEIV TEKRLALGSS QGVTPNWGWQ  420
IHSQVNSTQV PLFSAAASSG FSFSATHFPA AIHPLCRPGS TAHNLHFTSA KASLNSPQYH  480
HQLNPQQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463880.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-122RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S3CK840.0A0A1S3CK84_CUCME; ethylene-responsive transcription factor RAP2-7 isoform X2
STRINGXP_008463879.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-115related to AP2.7