PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013099
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 226aa    MW: 25583.8 Da    PI: 8.0439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013099genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell  +vk  G ++W+ I++ +  gR++k+c++rw++ 
        Cla013099 12 KGPWSPEEDELLRMLVKNQGARNWSIISKSIH-GRSGKSCRLRWFNQ 57
                     79******************************.***********996 PP
2Myb_DNA-binding59.95.6e-1964108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eEde++v+a+ ++G++ W+tIar ++ gRt++ +k++w++ 
        Cla013099  64 RRSFTAEEDEIIVEAHGKYGNK-WATIARLLN-GRTDNAIKNHWNST 108
                      678*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.926758IPR017930Myb domain
SuperFamilySSF466891.45E-309105IPR009057Homeodomain-like
SMARTSM007172.0E-111160IPR001005SANT/Myb domain
PfamPF002493.3E-161257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-241365IPR009057Homeodomain-like
CDDcd001671.22E-111456No hitNo description
PROSITE profilePS5129423.94259113IPR017930Myb domain
SMARTSM007173.2E-1663111IPR001005SANT/Myb domain
PfamPF002491.1E-1564108IPR001005SANT/Myb domain
CDDcd001671.68E-1166109No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2366115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGSTQADIDR VKGPWSPEED ELLRMLVKNQ GARNWSIISK SIHGRSGKSC RLRWFNQLCP  60
GVERRSFTAE EDEIIVEAHG KYGNKWATIA RLLNGRTDNA IKNHWNSTLK RKFSWIREKK  120
TDCASQGSTI SVSNQCLSPS ESETSDSVRS TDMEPSTRLT LCLPGADTLS PIGGEQSISS  180
SAVEEKERRK RACFGEEFIC VMQKMIKEEV RNYMAEYERE GKGIQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-3991144109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022985148.11e-130transcription factor MYB44-like
SwissprotO231602e-60MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1S4E1N41e-115A0A1S4E1N4_CUCME; transcription factor MYB44-like
STRINGXP_004140809.11e-102(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-62myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]