PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012835

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 268aa MW: 31459.6 Da PI: 10.2101

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012835	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.4	5e-20	9	97	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+++ i++r ++e++l +++ +kk+lWe s++mre+gf r++ qCk+kw+nl ryk +++ k+ +cp+f++++ Cla012835 9 QWSEEETREFIRIRADLEKDLTAAStgeapaaKKKTLWEMASARMREKGFWRTADQCKCKWKNLLSRYKGKETSHKE----FGWQCPFFEEIH 97 7*******************8655556666**********************************9999997....4668***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-17	8	98	No hit	No description
CDD	cd12203	7.95E-18	9	80	No hit	No description
PROSITE profile	PS50090	6.98	10	73	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MPATAQQHQW SEEETREFIR IRADLEKDLT AASTGEAPAA KKKTLWEMAS ARMREKGFWR 60 TADQCKCKWK NLLSRYKGKE TSHKEFGWQC PFFEEIHAVF TERGKVMHRL LLEPEACSIA 120 TKKRVRERSL EEYSNLKQLN EDETEEEVTL TQSNSQKRKA ARTLPAKSLG ATDSKNSSSS 180 VSNEILEMLK GFFQWQQRME MGWRGILERH YNKRRLFEXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXRNGANQ WRSSRGRG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	1e-165	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	1e-165	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148982.1	1e-126	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A0A0KV13	1e-125	A0A0A0KV13_CUCSA; Uncharacterized protein
STRING	XP_004148982.1	1e-126	(Cucumis sativus)
STRING	XP_004164548.1	1e-126	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	4e-20	Trihelix family protein