PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla012155 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28879.7 Da PI: 6.3119 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 4.9e-11 | 2 | 36 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Cla012155 2 IIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 36 5788899****.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0057 | 1 | 38 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 1 | 37 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.94E-7 | 1 | 36 | No hit | No description |
PROSITE profile | PS51294 | 19.909 | 1 | 40 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-9 | 2 | 41 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.7E-10 | 2 | 36 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MIIHLQALLG NKWAAIASYL PQRTDNDIKN YWNTHLKKKL KSAFEDHNNS PHNSKASDHS 60 TTSEFFSKGF FNDSSKRSFD FDSASSSSAA SCFGPNRAST ASSSSSTYYS SAENISRLLE 120 GWMRSSPKKN DDNNNENLFH FHEKQSHDNG DSSMVSIQGL EPKTEQDGSD GVALRKEIKS 180 SIVSPKNLNN DDNNFDVGKM MKKKMSYESC ENYDNIKQNR SENNNQNNPP LSFLEKWLLD 240 DTAVQVEEMM ALSPMF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | LKKKLKS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681878 | 1e-170 | LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036. | |||
GenBank | LN713262 | 1e-170 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455771.1 | 1e-125 | PREDICTED: myb-related protein 306 | ||||
Refseq | XP_011653837.1 | 1e-125 | PREDICTED: myb-related protein 306 | ||||
TrEMBL | A0A1S3C1M3 | 1e-124 | A0A1S3C1M3_CUCME; myb-related protein 306 | ||||
STRING | XP_008455771.1 | 1e-124 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8203 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 2e-29 | myb domain protein 60 |