PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla012000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 374aa MW: 42431.3 Da PI: 5.6036 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 72 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p n+ k+ r +lg+f ta +Aa a+++a+k+++g Cla012000 72 NFRGVRQRT-WGKWVAEIREPIAsNNtrvkKKgSRLWLGTFATAHQAALAYDEAAKAMYG 130 69****999.**********7567889*86448************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-13 | 71 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.72E-29 | 71 | 140 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 72 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-34 | 72 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-19 | 72 | 140 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.588 | 72 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-9 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MTSENSSGEK ISRKRRNGYV SVVDTLNKWK KLNNQLEDLA KDGVEEIRRV PAKGSKKGCM 60 RGKGGPQNSD CNFRGVRQRT WGKWVAEIRE PIASNNTRVK KKGSRLWLGT FATAHQAALA 120 YDEAAKAMYG PFARLNFPDS SSSPLKPVIV EHSDSISPVA SSSSSSSIFN GLSAEKMNCC 180 YSMDKQENCG YESMEELKVK VEETARNRVN YTDATFYDSN IGNRLTEGNI KEGLADVVRS 240 RDINRDSHDQ NDPSELCFKF EAMDTNGCND LNECNQYVLQ KFQSDPYART YWIPAEWEIG 300 DLGSAPVMEG KPMEIESYGD CRAFNRDLSL LLDRQKHMGV GDQRVDDCNF EFLRPDYDFG 360 LEEERKWLDL WFRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 72 | 138 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681884 | 0.0 | LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464230.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF036 | ||||
TrEMBL | A0A1S3CL17 | 0.0 | A0A1S3CL17_CUCME; ethylene-responsive transcription factor ERF036 | ||||
STRING | XP_008464230.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13286 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-41 | ERF family protein |