PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla011901

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 356aa MW: 40986.7 Da PI: 7.7241

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla011901	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	73	104	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 ++k++rr+++NReAAr+sR RKk ++++Le+ Cla011901 73 DDKVQRRLAQNREAARKSRMRKKVYVQQLETS 104 589**************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-4	71	124	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.99	73	117	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-6	74	105	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.57E-7	75	116	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-7	75	118	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-28	160	235	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSSSSTQLCA SRMGIYEPFH QINSWANAFG SRLDTSISPI IKVDDCVDIK PEFVPFESMD 60 HLESSQEMNK PIDDKVQRRL AQNREAARKS RMRKKVYVQQ LETSRLKLRL LEQELERTKQ 120 QKGTSCLVDI SHFGFSGFVN PGIAAFEMEY NHWVEEQQRQ ITELRKALQV HTTDIELQIL 180 VESSLNHYHN LFCMKANAAK ADVFYLMSGI WRTSAERFFH WIGGFRPSEL LNVLKPYFEP 240 LNEQQRADIH KLQQSSRQAE DALTQGMEKL HQNLSLSIAS DPIGSYISQM GDGMEKLEAL 300 ESFVSQADHL RQQTLKRMSH ILTTKQAAQG LLALGEYFHR LRILSSLWAT RPREPA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSSSSTQLCA SRMGIYEPFH QINSWANAFG SRLDTSISPI IKVDDCVDIK PEFVPFESMD  60
HLESSQEMNK PIDDKVQRRL AQNREAARKS RMRKKVYVQQ LETSRLKLRL LEQELERTKQ  120
QKGTSCLVDI SHFGFSGFVN PGIAAFEMEY NHWVEEQQRQ ITELRKALQV HTTDIELQIL  180
VESSLNHYHN LFCMKANAAK ADVFYLMSGI WRTSAERFFH WIGGFRPSEL LNVLKPYFEP  240
LNEQQRADIH KLQQSSRQAE DALTQGMEKL HQNLSLSIAS DPIGSYISQM GDGMEKLEAL  300
ESFVSQADHL RQQTLKRMSH ILTTKQAAQG LLALGEYFHR LRILSSLWAT RPREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	1e-120	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	1e-120	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649912.1	0.0	PREDICTED: transcription factor TGA7-like isoform X2
Refseq	XP_011649913.1	0.0	PREDICTED: transcription factor TGA7-like isoform X2
Swissprot	Q93ZE2	1e-145	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A1S3B3Q6	0.0	A0A1S3B3Q6_CUCME; transcription factor TGA7-like isoform X2
STRING	XP_004138645.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-136	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]