PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25905.9 Da PI: 6.9717 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F+++ L H++ H Cla010119 89 FECQYCLKEFTNSQALGGHQNAH 111 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.03E-6 | 86 | 116 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 88 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.4E-6 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.406 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MMGKDSLVCN LEEGESGLFS GGSCMEKKVK LFGIELNPAK NYKEEELGRN YKGCCNIGEG 60 DHESVNSSTT VCFERSSEQQ AAIVKQPKFE CQYCLKEFTN SQALGGHQNA HKKERLKKKK 120 MQLQARKATL SYYLQPSFQT TSNNFLYDYP SSPPCFFSDD SSSQISFNQN DAQLIHFDAS 180 LSFLPQQQRS FFTLTPPDMS SGTPNPVVFH SFSSSSSSSS PSCKSLDLQL GLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | ERLKKKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 2e-49 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 2e-49 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022151218.1 | 2e-80 | zinc finger protein 5-like | ||||
TrEMBL | A0A0A0KVQ6 | 5e-75 | A0A0A0KVQ6_CUCSA; Uncharacterized protein | ||||
STRING | XP_008446260.1 | 4e-74 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9594 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 4e-14 | zinc finger protein 5 |