PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | HSF | ||||||||
Protein Properties | Length: 192aa MW: 22272.2 Da PI: 7.638 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 98.3 | 7.7e-31 | 12 | 123 | 2 | 102 |
HHHHHHHHHCTG....................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTS CS HSF_DNA-bind 2 Flkklyeilede....................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskeki 78 Fl+k+y++le++ ++++sw+++g+ f+v+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk+++++ Cla009616 12 FLSKTYDLLEEAagsfhfkaadqeeeeeeekdGGSRIVSWNAEGSGFIVWSPADFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSSKR--------- 99 999999999955555555555555666665557899************************************************9998......... PP EEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 79 weFkhksFkkgkkellekikrkks 102 weFkh++F++g++++l +i rkk Cla009616 100 WEFKHEKFQRGNRHMLVEIVRKKC 123 *********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.3E-34 | 4 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.0E-37 | 8 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.3E-28 | 12 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.48E-24 | 45 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MQSSRTRNPA PFLSKTYDLL EEAAGSFHFK AADQEEEEEE EKDGGSRIVS WNAEGSGFIV 60 WSPADFSELL LPKYFKHNNF SSFIRQLNTY GFKKTSSKRW EFKHEKFQRG NRHMLVEIVR 120 KKCEPSVFPA FLRSSHEGTV TMAVDQENGD HLLLMEENSN LRRQKLELQA QIAKFKALHI 180 RLLDCLGQCI EK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-13 | 48 | 121 | 36 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-13 | 48 | 121 | 45 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-13 | 48 | 121 | 45 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-13 | 48 | 121 | 45 | 129 | Heat shock factor protein 1 |
5hdg_A | 1e-13 | 48 | 121 | 26 | 110 | Heat shock factor protein 1 |
5hdn_A | 1e-13 | 48 | 121 | 26 | 110 | Heat shock factor protein 1 |
5hdn_B | 1e-13 | 48 | 121 | 26 | 110 | Heat shock factor protein 1 |
5hdn_C | 1e-13 | 48 | 121 | 26 | 110 | Heat shock factor protein 1 |
5hdn_D | 1e-13 | 48 | 121 | 26 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-132 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-132 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439862.1 | 1e-124 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A1S3AZS2 | 1e-122 | A0A1S3AZS2_CUCME; heat stress transcription factor B-2a-like | ||||
STRING | XP_008439862.1 | 1e-123 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 7e-38 | heat shock transcription factor B2A |