PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008539
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 424aa    MW: 48042.2 Da    PI: 7.159
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008539genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.23.8e-22121215185
   trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                +Wt++ v++Li+++  ++++ ++g          +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d++
  Cla008539 121 KWTDEIVRLLITVVACVGDDGEAGVgskrksgilQKKGKWKTVSKIMLSKGCHVSPQQCEDKFNDLNKRYKRLNDIIGRGtSCRVVENPALMDSM 215
                7**************9988888763345667888*********************************************9569999999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-19119242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKMDSSGLGG GFLSANGGLL DLESPIRRPQ KTQLFNPSLT QRHHLNMMST FEGDHQSIGI  60
VDTKSVGQKD LLMAFSKRKA IASGCNTNNY TSEEDEPSFT EDGECSEFLK GKKGSPWQRM  120
KWTDEIVRLL ITVVACVGDD GEAGVGSKRK SGILQKKGKW KTVSKIMLSK GCHVSPQQCE  180
DKFNDLNKRY KRLNDIIGRG TSCRVVENPA LMDSMPHLSS KAKDDVRKIL SSKHLFYKEM  240
CAYHNGQTIP GCQDVDIQGK ILPVANFSKG NNESEEAEDS DSDSESGESA SEDDHSPVEN  300
SLWPSESRGR DKASADDGPL WSNSVAKNEF EGQIDVFLSD PTKSQWERRD WVKIQMLQLQ  360
EQCMTFQAQS VELEKQRFKW LRYCSKKNRD LERVRLENER MKLDNERRVL QLKQKEMELE  420
LKKV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449727.10.0PREDICTED: uncharacterized protein LOC103491522
TrEMBLA0A1S3BM360.0A0A1S3BM36_CUCME; uncharacterized protein LOC103491522
STRINGXP_008449727.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-81sequence-specific DNA binding transcription factors