PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla006956

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 212aa MW: 23173.7 Da PI: 7.3092

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006956	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	9.8e-39	13	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll+++p+ +r da +l+yeA ar+rdPvyG+v+ i++lqqq+ +l+aela++++ Cla006956 13 PCGACKFLRRKCVKGCIFAPYFDSEQgAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQA 112 7*********************9989******************************************************************9998 PP DUF260 100 e 100 + Cla006956 113 K 113 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.357	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-37	13	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSGGGGGGQG GGPCGACKFL RRKCVKGCIF APYFDSEQGA AHFAAVHKVF GASNASKLLH 60 RIPPPKRLDA CVTLCYEALA RVRDPVYGCV AQIFTLQQQV VNLQAELAYI QAKLATLQRL 120 FPPPLQDASL PTRDSLLPET IPGSDMGLMS NVPMLLDPLQ TQLGYNEMTN NFPNPIYHQD 180 QMDEDGDLQS LARELVSRYL PEVRQRPPCS QI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-36	10	114	8	111	LOB family transfactor Ramosa2.1
5ly0_B	7e-36	10	114	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145059.2	1e-121	PREDICTED: LOB domain-containing protein 19
Swissprot	O81322	8e-64	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A0A0KCW1	1e-119	A0A0A0KCW1_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3CBD6	1e-119	A0A1S3CBD6_CUCME; LOB domain-containing protein 19
STRING	XP_008460130.1	1e-120	(Cucumis melo)
STRING	XP_004145059.1	1e-120	(Cucumis sativus)
STRING	XP_004153748.1	1e-120	(Cucumis sativus)
STRING	XP_004160688.1	1e-120	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	4e-64	LOB domain-containing protein 31